Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Central de Asturias (Oviedo)
Hospital Admission Unit Hematology
Patient Sex M
Patient Age 62
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation wound
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) OXA-48
MLST 78:dnaA(8), fusA(9), gyrB(6), leuS(9), pyrG(9), rplB(6), rpoB(8)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 1 S S
CEF 128 R R
AZT 128 R R
MEM 2 I S
IMI 1 S S
IMI-RELE 1 S S
ERT 16 R R
FOSFO 32 S S
GENTA 4 S R
TOBRA 4 S R
AMK 0.5 S S
CIP 16 R R
COLIS <0.06 WT S
AI2688_v1
AI2688_v1

Sample 272 was assembled with Unicycler_v0.4.6 into 8 scaffolds, 8 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2688_v1_c1 272 78 Browse 28 4437 4779216 1.00
Enterobacter cloacae
55.13 Non-mobilizable - - - - - - - - CP008824 0.18226900 966
AI2688_v1_c2 272 78 Browse 18 302 281514 1.22
Citrobacter freundii
46.35 Conjugative rep_cluster_1088, IncH 000139__NC_012555_00001, 000338__NC_021819 MOBH NC_012555_00231 MPF_F NC_005211_00200, NC_005211_00207, NC_005211_00005, NC_009838_00006, NC_005211_00012, NC_021845_00017, NC_005211_00030 MOBH NC_017484 CP008825 0.00659353 429
AI2688_v1_c3 272 78 Browse 3 137 115150 1.40
Enterobacter cloacae
51.78 Non-mobilizable IncFIB 000104__CP010386_00052 - - - - - - CP021897 0.00021574 86
AI2688_v1_c4 272 78 Browse 0 131 111618 1.75
Klebsiella oxytoca
53.27 Conjugative IncFII 000135__NC_014107_00001 MOBF NC_014107_00160 MPF_F NC_014107_00125, NC_014107_00126, NC_014107_00127, NC_009425_00108, NC_014107_00135, NC_014107_00137, NC_014107_00139, NC_014107_00145, NC_014107_00146, NC_014107_00154, NC_014107_00155, NC_014107_00159 - - CP022534 0.03896960 1933
AI2688_v1_c5 272 78 Browse 1 85 63570 1.21
Klebsiella pneumoniae
51.22 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00000000 681
AI2688_v1_c6 272 78 Browse 0 57 46638 2.23
Enterobacter hormaechei
50.90 Non-mobilizable rep_cluster_1 000232__CP012429 - - - - - - CP012429 0.20360400 1705
AI2688_v1_c7 272 78 Browse 3 14 9923 13.04
Salmonella enterica
57.29 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006, NC_011404_00002 - - MOBP NZ_HG941720 AB905284 0.02468310 2178
AI2688_v1_c8 272 78 Browse 0 3 2495 9.44
Enterobacter hormaechei
51.46 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - MOB_unknown NC_017722 CP010389 0.00098187 215