Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Central de Asturias (Oviedo)
Hospital Admission Unit Oncology
Patient Sex M
Patient Age 57
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation peritoneal fluid
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) OXA-48
MLST 15:gapA(1), infB(1), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(1)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 0.5 S S
CEF >128 R R
AZT >128 R R
MEM 32 R R
IMI 32 R R
IMI-RELE 32 R R
ERT 16 R R
FOSFO 256 R R
GENTA ≤0.25 S S
TOBRA 8 I R
AMK 4 S S
CIP 128 R R
COLIS 1 WT S
AH0330_v1
AH0330_v1

Sample 271T was assembled with Unicycler_v0.4.6 into 6 scaffolds, 6 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AH0330_v1_c1 271T 15 Browse 34 5015 5473455 1.00
Klebsiella pneumoniae
57.20 Non-mobilizable - - - - MPF_T NC_010726_00014, NC_005814_00013, NC_010726_00011, NC_013284_00016 - - CP015754 0.21089700 1583
AH0330_v1_c2 271T 15 Browse 7 188 170150 1.72
Klebsiella pneumoniae
53.40 Conjugative IncFII, IncR 000113__CP022035, 000204__CP008701_00115, 000128__CP023916 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_014312_00141, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_019389_00068, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019389_00080 - - CP020903 0.01747610 770
AH0330_v1_c3 271T 15 Browse 26 171 158474 1.41
Klebsiella quasipneumoniae
51.33 Conjugative IncFII, IncFIB 000124__KP125893_00142, 000107__CP014778_00094 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_019389_00068, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019389_00080, NC_019155_00032 - - CP010390 0.01369910 770
AH0330_v1_c4 271T 15 Browse 1 85 65015 1.58
Klebsiella pneumoniae
51.11 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00053260 681
AH0330_v1_c5 271T 15 Browse 0 2 2058 27.07
Escherichia coli
56.51 Non-mobilizable ColRNAI_rep_cluster_1993 000024__JX133088 - - - - - - KU302803 0.00050801 78
AH0330_v1_c6 271T 15 Browse 0 2 1552 27.25
Escherichia coli
51.87 Mobilizable ColRNAI_rep_cluster_1885 000013__DQ995351_00001 - - - - MOB_unknown CP018359 JN253636 0.05311790 414