Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Central de Asturias (Oviedo)
Hospital Admission Unit Otorhinolaryngology
Patient Sex F
Patient Age 76
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation blood culture
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) OXA-48
MLST 23:dnaA(22), fusA(15), gyrB(39), leuS(17), pyrG(47), rplB(11), rpoB(10)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 0.5 S S
CEF 32 R R
AZT >128 R R
MEM 2 I S
IMI 2 I S
IMI-RELE 2 I S
ERT 4 R R
FOSFO 64 S R
GENTA 0.5 S S
TOBRA ≤0.25 S S
AMK 32 I R
CIP 0.25 S S
COLIS <0.06 WT S
AI2674_v1
AI2674_v1

Sample 252 was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2674_v1_c1 252 23 Browse 29 4637 4878224 1.00
Enterobacter asburiae
55.64 Non-mobilizable rep_cluster_24 001516__NC_015969_00028 - - - - - - KT203286 0.18226900 767
AI2674_v1_c2 252 23 Browse 0 122 110358 1.71
Enterobacter asburiae
52.83 Non-mobilizable IncFII, IncFIB 000107__CP014778_00094, 000114__CP015527 - - - - - - CP011590 0.05095370 774
AI2674_v1_c3 252 23 Browse 1 116 106769 1.22
Enterobacter asburiae
52.74 Non-mobilizable IncFII, IncFIA 000093__KX023259_00112, 000114__CP015527, 000122__JQ418538 - - MPF_F NC_014312_00118, NC_014312_00116, NC_022609_00068 - - CP011587 0.01975650 780
AI2674_v1_c4 252 23 Browse 1 88 65572 1.74
Klebsiella pneumoniae
51.29 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00055724 681
AI2674_v1_c5 252 23 Browse 0 5 4804 13.73
Klebsiella pneumoniae
46.36 Non-mobilizable ColRNAI_rep_cluster_1987, rep_cluster_2050 001473__CP024541, 000019__CP000651_00005 - - - - - - CP018358 0.06343940 204