Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Central de Asturias (Oviedo)
Hospital Admission Unit Neonatology
Patient Sex F
Patient Age
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation abscess
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella oxytoca
Carbapenamase type(s) OXA-48
MLST 101:gapA(2), infB(3), mdh(2), pgi(2), phoE(45), rpoB(10), tonB(1)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 0.5 S S
CEF >128 R R
AZT >128 R R
MEM 0.5 S S
IMI 2 I S
IMI-RELE 1 S S
ERT 1 I R
FOSFO 32 S S
GENTA 1 S S
TOBRA 16 R R
AMK 128 R R
CIP 0.12 S S
COLIS <0.06 WT S
AI2945_v1
AI2945_v1

Sample 250 was assembled with Unicycler_v0.4.6 into 3 scaffolds, 3 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2945_v1_c1 250 101 Browse 23 5442 5942035 1.00
Klebsiella oxytoca
55.10 Non-mobilizable - - - - MPF_F NC_014304_00056 - - CP008701 0.21953100 1229
AI2945_v1_c2 250 101 Browse 10 130 98209 1.67
Klebsiella pneumoniae
50.82 Conjugative IncR, IncL/M, IncFIA 000148__NC_021488_00028, 000204__CP008701_00115, 000093__KX023259_00112 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.01006230 681
AI2945_v1_c3 250 101 Browse 0 2 2815 12.14
Citrobacter freundii
47.46 Non-mobilizable ColRNAI_rep_cluster_1857 000012__CP000801 - - - - - - EU092237 0.13097900 3205