Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Central de Asturias (Oviedo)
Hospital Admission Unit ICU
Patient Sex M
Patient Age 56
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation sputum
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) OXA-48
MLST 1379:dnaA(52), fusA(21), gyrB(20), leuS(44), pyrG(45), rplB(4), rpoB(245)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI ≤0.25 S S
CEF >128 R R
AZT >128 R R
MEM 2 I S
IMI 1 S S
IMI-RELE 0.5 S S
ERT 0.5 S S
FOSFO <32 S S
GENTA 64 R R
TOBRA 32 R R
AMK 4 S S
CIP 16 R R
COLIS <0.06 WT S
AI2673_v1
AI2673_v1

Sample 249 was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2673_v1_c1 249 1379 Browse 25 4461 4817783 1.00
Enterobacter hormaechei
55.28 Non-mobilizable - - - - - - - - KR653209 0.20360400 430
AI2673_v1_c2 249 1379 Browse 9 135 122177 1.31
Enterobacter hormaechei
50.51 Non-mobilizable IncFII, IncFIB 000135__NC_014107_00001, 000108__NC_014107_00054 - - - - - - CP012169 0.02156950 708
AI2673_v1_c3 249 1379 Browse 1 83 63570 2.48
Klebsiella pneumoniae
51.22 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00000000 681
AI2673_v1_c4 249 1379 Browse 0 7 4783 10.72
Enterobacter roggenkampii
52.50 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006, NC_011404_00002 - - MOBP CP008720 CP012164 0.01529360 100
AI2673_v1_c5 249 1379 Browse 0 3 2495 16.22
Leclercia adecarboxylata
51.46 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - MOB_unknown NC_017722 CP010389 0.00100720 215