Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Central de Asturias (Oviedo)
Hospital Admission Unit Primary care
Patient Sex F
Patient Age 88
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) OXA-48
MLST 147:gapA(3), infB(4), mdh(6), pgi(1), phoE(7), rpoB(4), tonB(38)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 0.5 S S
CEF 64 R R
AZT >128 R R
MEM 0.5 S S
IMI 1 S S
IMI-RELE 0.5 S S
ERT 2 R R
FOSFO <32 S S
GENTA 32 R R
TOBRA 1 S S
AMK 1 S S
CIP >128 R R
COLIS <0.06 WT S
AI2671_v1
AI2671_v1

Sample 247 was assembled with Unicycler_v0.4.6 into 4 scaffolds, 4 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2671_v1_c1 247 147 Browse 31 4922 5334172 1.00
Klebsiella pneumoniae
57.42 Non-mobilizable - - - - - - - - CP007734 0.20360400 1586
AI2671_v1_c2 247 147 Browse 24 451 453861 1.64
Klebsiella pneumoniae
48.42 Conjugative IncFIB, rep_cluster_1150 000107__CP014778_00094, 000430__CP020850 MOBH NC_016980_00239 MPF_F NC_016980_00240, NC_018107_00101, NC_016980_00110, NC_016980_00109, NC_016980_00099, NC_018107_00235, NC_023911_00309 - - CP015501 0.02656350 1530
AI2671_v1_c3 247 147 Browse 20 150 125259 1.61
Klebsiella pneumoniae
53.02 Non-mobilizable IncR, IncFIA, rep_cluster_1418 000204__CP008701_00115, 000093__KX023259_00112, 000759__NC_013950_00034 - - - - - - CP009116 0.02895610 726
AI2671_v1_c4 247 147 Browse 0 4 4167 17.11
Klebsiella pneumoniae
41.52 Non-mobilizable ColRNAI_rep_cluster_1987, rep_cluster_2050 001473__CP024541, 000019__CP000651_00005 - - - - - - EU932690 0.00058191 205