Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Central de Asturias (Oviedo)
Hospital Admission Unit ICU
Patient Sex M
Patient Age 66
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation blood culture
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) OXA-48
MLST 485:gapA(2), infB(1), mdh(1), pgi(1), phoE(7), rpoB(1), tonB(12)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 4 R R
CAZ 0.5 S S
CAZ-AVI ≤0.25 S S
CEF 0.5 S S
AZT 0.12 S S
MEM 0.5 S S
IMI 2 I S
IMI-RELE 1 S S
ERT 2 R R
FOSFO <32 S S
GENTA 64 R R
TOBRA 128 R R
AMK 2 S S
CIP 4 R R
COLIS <0.06 WT S
AI2667_v1
AI2667_v1

Sample 242 was assembled with Unicycler_v0.4.6 into 4 scaffolds, 4 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2667_v1_c1 242 485 Browse 32 4888 5295905 1.00
Klebsiella pneumoniae
57.46 Mobilizable - - MOBP NC_021576_00050 - - - - CP007734 0.21089700 1586
AI2667_v1_c2 242 485 Browse 1 81 63570 1.49
Klebsiella pneumoniae
51.21 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00002383 681
AI2667_v1_c3 242 485 Browse 2 32 32754 1.79
Escherichia coli
54.87 Mobilizable IncR 000204__CP008701_00115 MOBP NC_021576_00050 - - - - LC155908 0.01306380 731
AI2667_v1_c4 242 485 Browse 0 1 2987 8.77
Escherichia coli
45.36 Non-mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - - - CP000974 0.06289950 174