Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Son de Espases (Palma de Mallorca)
Hospital Admission Unit Cardiology
Patient Sex F
Patient Age 86
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) OXA-48
MLST 171:dnaA(49), fusA(21), gyrB(19), leuS(44), pyrG(45), rplB(12), rpoB(32)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper 256 R R
P/T 256 R R
CTX >128 R R
CAZ >128 S S
CAZ-AVI >128 S S
CEF 128 R R
AZT 16 R R
MEM 4 R I
IMI 2 I S
IMI-RELE 2 I S
ERT 4 R R
FOSFO 128 I R
GENTA 32 R R
TOBRA 4 S R
AMK 8 S S
CIP 128 R R
COLIS <0.06 WT S
AH0328_v1
AH0328_v1

Sample 231T was assembled with Unicycler_v0.4.6 into 4 scaffolds, 4 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AH0328_v1_c1 231T 171 Browse 37 4711 4975330 1.00
Enterobacter hormaechei
54.81 Conjugative rep_cluster_1088, IncH 000139__NC_012555_00001, 000338__NC_021819 MOBH NC_012555_00231 MPF_F NC_005211_00200, NC_005211_00207, NC_005211_00005, NC_009838_00006, NC_005211_00012, NC_021845_00017, NC_005211_00030 MOBH NC_017484 LK056646 0.10933100 429
AH0328_v1_c2 231T 171 Browse 1 63 47519 2.63
Klebsiella pneumoniae
51.32 Non-mobilizable IncL/M 000148__NC_021488_00028 - - MPF_I NC_004464_00105, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - LN864820 0.00095658 681
AH0328_v1_c3 231T 171 Browse 0 6 4804 6.21
Klebsiella pneumoniae
46.32 Non-mobilizable ColRNAI_rep_cluster_1987, rep_cluster_2050 001473__CP024541, 000019__CP000651_00005 - - - - - - CP018358 0.06343940 204
AH0328_v1_c4 231T 171 Browse 0 3 2495 10.81
Enterobacter hormaechei
51.46 Mobilizable ColRNAI_rep_cluster_1857 000009__CP017845 - - - - MOB_unknown NC_017722 CP010389 0.00100720 215