Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Son de Espases (Palma de Mallorca)
Hospital Admission Unit ICU
Patient Sex M
Patient Age 69
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation sputum
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) VIM-1
MLST 78:dnaA(8), fusA(9), gyrB(6), leuS(9), pyrG(9), rplB(6), rpoB(8)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >256 R R
CAZ-AVI >256 R R
CEF 128 R R
AZT 64 R R
MEM 8 R I
IMI 8 R R
IMI-RELE 8 R R
ERT 16 R R
FOSFO 64 S R
GENTA 8 I R
TOBRA 16 R R
AMK 16 S R
CIP 64 R R
COLIS <0.06 WT S
AI2659_v1
AI2659_v1

Sample 230 was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2659_v1_c1 230 78 Browse 29 4502 4847468 1.00
Enterobacter cloacae
55.04 Non-mobilizable - - - - MPF_F NC_014304_00056 - - CP008824 0.17817300 966
AI2659_v1_c2 230 78 Browse 22 291 276644 1.16
Citrobacter freundii
46.92 Conjugative rep_cluster_1088, IncH 000139__NC_012555_00001, 000338__NC_021819 MOBH NC_012555_00231 MPF_F NC_005211_00200, NC_005211_00207, NC_005211_00005, NC_009838_00006, NC_005211_00012, NC_021845_00017, NC_005211_00030 MOBH NC_017484 LN794248 0.00912584 429
AI2659_v1_c3 230 78 Browse 3 138 115150 1.59
Enterobacter cloacae
51.80 Non-mobilizable IncFIB 000104__CP010386_00052 - - - - - - CP021897 0.00033687 86
AI2659_v1_c4 230 78 Browse 1 109 104655 1.28
Enterobacter hormaechei
51.99 Mobilizable rep_cluster_1444 000787__CP010385_00030 - - - - MOB_unknown NC_016039 CP010383 0.00040999 1109
AI2659_v1_c5 230 78 Browse 0 9 4995 13.31
Enterobacter roggenkampii
51.79 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_011404_00002 - - MOBP CP008720 NC_011404 0.00157453 102