Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Son de Espases (Palma de Mallorca)
Hospital Admission Unit Neurosurgery
Patient Sex F
Patient Age 37
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation catheter
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) VIM-1
MLST 133:dnaA(11), fusA(4), gyrB(4), leuS(13), pyrG(39), rplB(4), rpoB(9)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 128 R R
CAZ >256 R R
CAZ-AVI >256 R R
CEF 128 R R
AZT 32 R R
MEM 8 R I
IMI 8 R R
IMI-RELE 4 R R
ERT 4 R R
FOSFO <32 S S
GENTA 8 I R
TOBRA 16 R R
AMK 8 S S
CIP 2 R R
COLIS <0.06 WT S
AI2939_v1
AI2939_v1

Sample 225 was assembled with Unicycler_v0.4.6 into 5 scaffolds, 5 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2939_v1_c1 225 133 Browse 25 4550 4924008 1.00
Enterobacter hormaechei
55.43 Non-mobilizable - - - - MPF_F NC_014304_00056 - - CP008824 0.17817300 966
AI2939_v1_c2 225 133 Browse 24 309 293216 1.21
Citrobacter freundii
46.81 Conjugative rep_cluster_1088, IncH 000139__NC_012555_00001, 000338__NC_021819 MOBH NC_012555_00231 MPF_F NC_005211_00200, NC_005211_00207, NC_005211_00005, NC_009838_00006, NC_005211_00012, NC_021845_00017, NC_005211_00030 MOBH NC_017484 LN794248 0.00755945 429
AI2939_v1_c3 225 133 Browse 1 134 115994 1.38
Enterobacter hormaechei
51.50 Mobilizable - - - - - - MOB_unknown NC_019125 CP010383 0.03756030 1109
AI2939_v1_c4 225 133 Browse 0 7 5540 25.59
Klebsiella pneumoniae
50.04 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006 - - MOBP CP018941 KU302809 0.06107070 128
AI2939_v1_c5 225 133 Browse 0 4 2511 39.09
Enterobacter hormaechei
51.81 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - MOB_unknown NC_019094 CP012166 0.00322742 215