Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Son de Espases (Palma de Mallorca)
Hospital Admission Unit General surgery
Patient Sex F
Patient Age 76
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation peritoneal fluid
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella oxytoca
Carbapenamase type(s) VIM-1
MLST 326:gapA(4), infB(6), mdh(14), pgi(35), phoE(96), rpoB(5), tonB(6)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX 128 R R
CAZ >256 R R
CAZ-AVI >256 R R
CEF 128 R R
AZT 128 R R
MEM 2 I S
IMI 1 S S
IMI-RELE 1 S S
ERT 2 R R
FOSFO <32 S S
GENTA 64 R R
TOBRA 16 R R
AMK 16 S R
CIP 8 R R
COLIS <0.06 WT S
AI2937_v1
AI2937_v1

Sample 223 was assembled with Unicycler_v0.4.6 into 3 scaffolds, 3 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2937_v1_c1 223 326 Browse 28 5273 5805216 1.00
Klebsiella sp.
55.93 Non-mobilizable - - - - - - - - CP009275 0.21089700 1229
AI2937_v1_c2 223 326 Browse 32 243 247179 1.39
Klebsiella pneumoniae
52.53 Conjugative IncFII, IncFIB 000124__KP125893_00142, 000107__CP014778_00094 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_011281_00082, NC_022609_00081, NC_014312_00128, NC_019389_00068, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019155_00032 - - KY271404 0.00202665 770
AI2937_v1_c3 223 326 Browse 17 68 58715 10.17
Klebsiella pneumoniae
53.70 Mobilizable IncR 000204__CP008701_00115 MOBP NC_021576_00050 - - - - NC_023314 0.00299754 730