Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario La Princesa (Madrid)
Hospital Admission Unit Urology
Patient Sex F
Patient Age 77
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation urine
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) OXA-48
MLST 11:gapA(3), infB(3), mdh(1), pgi(1), phoE(1), rpoB(1), tonB(4)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI ≤0.25 S S
CEF 128 R R
AZT >128 R R
MEM 4 R I
IMI 2 I S
IMI-RELE 2 I S
ERT 4 R R
FOSFO 256 R R
GENTA 16 R R
TOBRA 32 R R
AMK 1 S S
CIP 32 R R
COLIS 16 NWT R
AI2926_v1
AI2926_v1

Sample 212 was assembled with Unicycler_v0.4.6 into 2 scaffolds, 2 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2926_v1_c1 212 11 Browse 34 5055 5375747 1.00
Klebsiella pneumoniae
57.40 Non-mobilizable - - - - MPF_T NC_010726_00014, NC_005814_00013, NC_010726_00011, NC_013284_00016 - - CP015754 0.20360400 1583
AI2926_v1_c2 212 11 Browse 6 139 121346 2.44
Citrobacter freundii
53.03 Non-mobilizable IncFIB 000101__NZ_CP012345_00042 - - - - - - CP017059 0.02664840 748