Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario La Princesa (Madrid)
Hospital Admission Unit Internal medicine
Patient Sex M
Patient Age 65
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation abscess
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) OXA-48
MLST 732:dnaA(127), fusA(25), gyrB(254), leuS(206), pyrG(49), rplB(101), rpoB(26)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 256 R R
CTX 128 R R
CAZ 64 R R
CAZ-AVI 0.5 S S
CEF 32 R R
AZT 128 R R
MEM 2 I S
IMI 1 S S
IMI-RELE 1 S S
ERT 8 R R
FOSFO <32 S S
GENTA 64 R R
TOBRA 32 R R
AMK 4 S S
CIP >128 R R
COLIS 0.25 WT S
AI2905_v1
AI2905_v1

Sample 188 was assembled with Unicycler_v0.4.6 into 6 scaffolds, 6 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2905_v1_c1 188 732 Browse 30 4389 4749841 1.00
Enterobacter roggenkampii
56.01 Non-mobilizable - - - - - - - - CP019447 0.26302200 1447
AI2905_v1_c2 188 732 Browse 14 225 190742 1.68
Enterobacter cloacae
51.99 Non-mobilizable IncFII, IncFIB 000135__NC_014107_00001, 000108__NC_014107_00054 - - MPF_F NC_009131_00030, NC_011617_00041, NC_014107_00125, NC_014107_00126, NC_014107_00127, NC_014107_00135 - - CP012169 0.00948708 708
AI2905_v1_c3 188 732 Browse 1 84 65499 5.36
Klebsiella pneumoniae
51.43 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - KX523901 0.00009552 681
AI2905_v1_c4 188 732 Browse 0 42 33826 6.98
Escherichia coli
41.60 Conjugative IncX4 000222__CP010880_00038 MOBP NC_013718_00057 MPF_T NC_013718_00041, NC_013718_00044, NC_013718_00045, NC_021079_00038 - - KT754165 0.00451781 585
AI2905_v1_c5 188 732 Browse 0 13 11244 11.71
Escherichia coli
60.17 Non-mobilizable - - - - - - - - KM107845 0.04650050 4520
AI2905_v1_c6 188 732 Browse 0 13 10592 8.63
Pectobacterium brasiliense
56.78 Non-mobilizable - - - - - - - - 1.00000000