Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Ramón y Cajal (Madrid)
Hospital Admission Unit None
Patient Sex F
Patient Age 81
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation wound
Infection or Colonization I
Outbreak None
Genus/Species
Serratia marcescens
Carbapenamase type(s) OXA-48
MLST 0:
EDTA Assay (if any) None
PCR Result (if any) OXA-48 positive
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 128 R R
CTX 64 R R
CAZ >128 R R
CAZ-AVI ≤0.25 S S
CEF 16 R R
AZT 128 R R
MEM 1 S S
IMI 2 I S
IMI-RELE 2 I S
ERT 4 R R
FOSFO >256 R R
GENTA 1 S S
TOBRA 4 S R
AMK 8 S S
CIP >128 R R
COLIS >128 NWT R
AI2884_v1
AI2884_v1

Sample 152 was assembled with Unicycler_v0.4.6 into 2 scaffolds, 2 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2884_v1_c1 152 0 Browse 13 4684 5186895 1.00
Serratia marcescens
59.96 Non-mobilizable - - - - - - - - CP000136 0.29598100 1802
AI2884_v1_c2 152 0 Browse 1 80 63570 2.03
Klebsiella pneumoniae
51.22 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00000000 681