Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Ramón y Cajal (Madrid)
Hospital Admission Unit None
Patient Sex M
Patient Age 87
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation bone
Infection or Colonization I
Outbreak None
Genus/Species
Serratia marcescens
Carbapenamase type(s) OXA-48
MLST 0:
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper 256 R R
P/T 128 R R
CTX 32 R R
CAZ 8 I R
CAZ-AVI 0.5 S S
CEF 4 SDD I
AZT 32 R R
MEM 2 I S
IMI 8 R R
IMI-RELE 8 R R
ERT 4 R R
FOSFO >256 R R
GENTA 1 S S
TOBRA 0.5 S S
AMK 4 S S
CIP >128 R R
COLIS 32 NWT R
AI2872_v1
AI2872_v1

Sample 135 was assembled with Unicycler_v0.4.6 into 2 scaffolds, 2 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2872_v1_c1 135 0 Browse 13 4684 5187671 1.00
Serratia marcescens
59.96 Non-mobilizable - - - - - - - - CP000136 0.29598100 1802
AI2872_v1_c2 135 0 Browse 1 80 63570 4.06
Klebsiella pneumoniae
51.22 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00000000 681