Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario La Paz (Madrid)
Hospital Admission Unit ICU
Patient Sex M
Patient Age
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation BAS
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) VIM-1
MLST 108:dnaA(68), fusA(8), gyrB(75), leuS(63), pyrG(65), rplB(34), rpoB(35)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper 64 I R
P/T 64 I R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 128 R R
CEF 32 R R
AZT 64 R R
MEM 1 S S
IMI 2 I S
IMI-RELE 1 S S
ERT 1 I R
FOSFO <32 S S
GENTA 1 S S
TOBRA 8 I R
AMK 0.5 S S
CIP <0.06 S S
COLIS <0.06 WT S
AI2865_v1
AI2865_v1

Sample 122 was assembled with Unicycler_v0.4.6 into 8 scaffolds, 8 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2865_v1_c1 122 108 Browse 25 4314 4663323 1.00
Enterobacter cloacae
55.56 Non-mobilizable - - - - - - - - CP008824 0.17092600 966
AI2865_v1_c2 122 108 Browse 0 133 123995 4.43
Enterobacter cloacae
53.77 Conjugative IncFII, IncFIB 000135__NC_014107_00001, 000108__NC_014107_00054 MOBF NC_014107_00160 MPF_T NC_014107_00159 - - CP008907 0.02831510 809
AI2865_v1_c3 122 108 Browse 12 114 88765 6.21
Klebsiella pneumoniae
52.68 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - KU159085 0.01144190 681
AI2865_v1_c4 122 108 Browse 0 71 59044 4.84
Enterobacter cloacae
51.03 Non-mobilizable IncR 000204__CP008701_00115 - - - - - - CP007736 0.05311790 1221
AI2865_v1_c5 122 108 Browse 0 7 4783 9.85
Enterobacter roggenkampii
52.52 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_001848_00006 - - MOBP CP008720 CP012164 0.01529360 100
AI2865_v1_c6 122 108 Browse 0 5 4183 14.79
Klebsiella michiganensis
37.20 Non-mobilizable - - - - - - - - KP008371 0.16768800 1589
AI2865_v1_c7 122 108 Browse 0 4 3885 13.17
Klebsiella michiganensis
28.85 Non-mobilizable - - - - - - - - JQ996148 0.29598100 3209
AI2865_v1_c8 122 108 Browse 0 3 2504 10.65
Enterobacter hormaechei
51.64 Mobilizable ColRNAI_rep_cluster_1857 000009__CP017845 - - - - MOB_unknown NC_017722 CP010389 0.00134007 215