Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario La Paz (Madrid)
Hospital Admission Unit Anesthesia and Resuscitation
Patient Sex F
Patient Age 84
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation blood culture
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) OXA-48
MLST 405:gapA(2), infB(1), mdh(62), pgi(3), phoE(10), rpoB(4), tonB(110)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 128 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 2 S S
CEF >128 R R
AZT >128 R R
MEM 0.5 S S
IMI 1 S S
IMI-RELE 1 S S
ERT 2 R R
FOSFO >256 R R
GENTA 256 R R
TOBRA 32 R R
AMK 4 S S
CIP 8 R R
COLIS 1 WT S
AI2862_v1
AI2862_v1

Sample 119 was assembled with Unicycler_v0.4.6 into 2 scaffolds, 2 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2862_v1_c1 119 405 Browse 70 5165 5530992 1.00
Klebsiella pneumoniae
57.07 Conjugative IncFII, IncFIB 000124__KP125893_00142, 000107__CP014778_00094 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_011281_00082, NC_022609_00081, NC_014312_00128, NC_019389_00068, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019155_00032 - - KY271404 0.12449100 770
AI2862_v1_c2 119 405 Browse 0 5 4593 25.97
Salmonella enterica
50.45 Mobilizable ColRNAI_rep_cluster_1857 000008__AJ627566 MOBP NC_011082_00002 - - MOBP NZ_CP011065 CP011433 0.00055724 259