Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario La Paz (Madrid)
Hospital Admission Unit ICU
Patient Sex F
Patient Age 12
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation BAS
Infection or Colonization I
Outbreak None
Genus/Species
Enterobacter cloacae complex
Carbapenamase type(s) VIM-1
MLST 133:dnaA(11), fusA(4), gyrB(4), leuS(13), pyrG(39), rplB(4), rpoB(9)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T 128 R R
CTX >128 R R
CAZ >256 R R
CAZ-AVI 256 R R
CEF >128 R R
AZT >128 R R
MEM 2 I S
IMI 4 R I
IMI-RELE 4 R R
ERT 1 I R
FOSFO <32 S S
GENTA 1 S S
TOBRA 4 S R
AMK 2 S S
CIP 32 R R
COLIS 0.5 WT S
AI2859_v1
AI2859_v1

Sample 116 was assembled with Unicycler_v0.4.6 into 6 scaffolds, 6 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2859_v1_c1 116 133 Browse 25 4624 4959979 1.00
Enterobacter hormaechei
55.45 Non-mobilizable - - - - MPF_F NC_014304_00056 - - CP008824 0.17817300 966
AI2859_v1_c2 116 133 Browse 6 230 207148 1.48
Enterobacter cloacae
52.88 Conjugative IncFII, IncFIB 000135__NC_014107_00001, 000108__NC_014107_00054 MOBF NC_014107_00160 MPF_F NC_014107_00125, NC_014107_00126, NC_014107_00127, NC_009425_00108, NC_014107_00135, NC_014107_00137, NC_014107_00139, NC_014107_00145, NC_014107_00146, NC_014107_00154, NC_014107_00155, NC_014107_00159, NC_014107_00147 - - CP012169 0.00251903 708
AI2859_v1_c3 116 133 Browse 11 96 72412 2.33
Klebsiella pneumoniae
51.42 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP018342 0.00712406 681
AI2859_v1_c4 116 133 Browse 0 5 4760 17.51
Enterobacter hormaechei
51.62 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 MOBP NC_013090_00004 - - MOBP KT693145 AY079200 0.05311790 132
AI2859_v1_c5 116 133 Browse 0 2 3299 21.64
Enterobacter roggenkampii
51.96 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - MOBP CP018941 CP011049 0.03585750 98
AI2859_v1_c6 116 133 Browse 0 3 2511 17.67
Enterobacter hormaechei
51.81 Mobilizable ColRNAI_rep_cluster_1987 000019__CP000651_00005 - - - - MOB_unknown NC_019094 CP012166 0.00328537 215