Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Mutua de Terrassa (Terrassa)
Hospital Admission Unit ICU
Patient Sex M
Patient Age 69
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation sputum
Infection or Colonization I
Outbreak None
Genus/Species
Serratia marcescens
Carbapenamase type(s) OXA-48
MLST 0:
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper 128 R R
P/T 64 I R
CTX >128 R R
CAZ >128 R R
CAZ-AVI ≤0.25 S S
CEF >128 R R
AZT >128 R R
MEM 1 S S
IMI 8 R R
IMI-RELE 4 R R
ERT 2 R R
FOSFO 64 S R
GENTA 2 S S
TOBRA 8 I R
AMK 16 S R
CIP 64 R R
COLIS 4 NWT R
AI2857_v1
AI2857_v1

Sample 107 was assembled with Unicycler_v0.4.6 into 2 scaffolds, 2 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2857_v1_c1 107 0 Browse 12 4529 5034972 1.00
Serratia marcescens
60.00 Non-mobilizable - - - - - - - - CP013538 0.26302200 1801
AI2857_v1_c2 107 0 Browse 2 81 63589 2.94
Klebsiella pneumoniae
51.22 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00000000 681