Collection SERGAS
Isolation Year 2017
Isolation Location Hospital Universitario Mutua de Terrassa (Terrassa)
Hospital Admission Unit Outpatient
Patient Sex M
Patient Age 75
Community/Hospital/LTCF acquisition Community
Biological Sample of Isolation wound
Infection or Colonization I
Outbreak None
Genus/Species
Klebsiella pneumoniae
Carbapenamase type(s) OXA-48
MLST 152:gapA(2), infB(3), mdh(2), pgi(1), phoE(1), rpoB(4), tonB(56)
EDTA Assay (if any) None
PCR Result (if any) None
Agent MIC CLSI EUCAST
Piper >256 R R
P/T >256 R R
CTX >128 R R
CAZ >128 R R
CAZ-AVI 2 S S
CEF >128 R R
AZT >128 R R
MEM 2 I S
IMI 2 I S
IMI-RELE 1 S S
ERT 4 R R
FOSFO <32 S S
GENTA ≤0.25 S S
TOBRA 8 I R
AMK 4 S S
CIP >128 R R
COLIS 0.25 WT S
AI2854_v1
AI2854_v1

Sample 104 was assembled with Unicycler_v0.4.6 into 6 scaffolds, 6 of which are closed circles. More details can be found in the table below. Raw data such as the assembly FASTA and annotation files can be downloaded from the "Raw Data" box. The assembly can be browsed by clicking on the "Browse" link for each scaffold.

Scaffold Sample ST Jbrowse Resistance Genes All Genes Scaffold length Circular Est. Copy Number Species GC content Mobility Replicon type Replicon type accession Relaxase type Relaxase type accession MPF type Mpf type accession OriT type OriT accession MASH nearest neighbor MASH neighbor distance MASH neighbor cluster
AI2854_v1_c1 104 152 Browse 33 4892 5287707 1.00
Klebsiella variicola
57.37 Non-mobilizable - - - - MPF_T NC_010726_00014, NC_005814_00013, NC_010726_00011, NC_013284_00016 - - CP015754 0.21089700 1583
AI2854_v1_c2 104 152 Browse 34 237 228473 1.27
Klebsiella pneumoniae
53.86 Conjugative IncFII, IncFIB 000107__CP014778_00094, 000113__CP022035, 000132__HG969996 MOBF NC_021231_00058 MPF_F NC_021502_00150, NC_019165_00034, NC_021654_00016, NC_022609_00081, NC_014312_00128, NC_023332_00154, NC_014312_00118, NC_014312_00116, NC_021502_00131, NC_019389_00080, NC_019155_00032, NC_021654_00004 - - CP021540 0.00838426 767
AI2854_v1_c3 104 152 Browse 19 79 70650 1.65
Enterobacter cloacae
50.37 Mobilizable rep_cluster_1418 000759__NC_013950_00034 MOBP NC_021576_00050 - - - - CP009116 0.02999490 726
AI2854_v1_c4 104 152 Browse 1 83 63589 2.27
Klebsiella pneumoniae
51.22 Conjugative IncL/M 000148__NC_021488_00028 MOBP NC_004464_00056 MPF_I NC_004464_00105, NC_005246_00057, NC_019063_00094, NC_019344_00078, NC_004464_00066, NC_004464_00068, NC_019154_00069, NC_005246_00069, NC_004464_00073 - - CP015075 0.00000000 681
AI2854_v1_c5 104 152 Browse 0 11 8282 3.26
Klebsiella pneumoniae
56.62 Mobilizable ColRNAI_rep_cluster_1857 000004__DQ298019 MOBC NC_009793_00003 - - - - CP006658 0.07300180 765
AI2854_v1_c6 104 152 Browse 0 5 5101 24.45
Actinobacillus pleuropneumoniae
65.59 Mobilizable IncQ1 000194__NC_012006_00002 MOBQ NC_002636_00002 - - MOBQ CP021341 EU266532 0.06031450 902